International Scientific and Research Institute of Bioengineering

Publications

1. 26Bezrodnyi V.V., Mikhtaniuk S.E., Shavykin O.V., Sheveleva N.N., Markelov D.A., Neelov I.M. A Molecular Dynamics Simulation of Complexes of Fullerenes and Lysine-Based Peptide Dendrimers with and without Glycine Spacers // International Journal of Molecular Sciences - 2024, Vol. 25, No. 2, pp. 691 [IF: 3.226, SJR: 1.179]
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2. 25Bezrodnyi V.V., Fatullaev E.I., Mikhtaniuk S.E., Shavykin O.V., Neelov I.M., Darinskii A.A., Sheveleva N.N., Markelov D.A. Histidine-rich lysine-based dendrimer and its interaction with molecules of therapeutic tetrapeptide at two different pH // Magnetic Resonance and its Applications. SPINUS-2022: Proceedings 19th International School-Conference (Saint Petersburg, 28 марта – 1 апреля 2022 г.) - 2022, pp. 186-188
3. 24Fatullaev E.I., Bezrodnyi V.V., Neelov I.M. MD Simulation of AEDG Peptide Complexes with New K2R Dendrimer and Dendrigraft // International Journal of Biology and Biomedical Engineering - 2022, Vol. 16, pp. 73-81
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4. 23Shavykin O.V., Bezrodnyi V.V., Fatullaev E.I., Mikhtaniuk S.E., Darinskii A.A., Neelov I.M., Sheveleva N.N., Markelov D.A. The local orientational mobility of collapsed and swollen lysine based dendrimer with double histidine insertions // Magnetic Resonance and its Applications. SPINUS-2022: Proceedings 19th International School-Conference (Saint Petersburg, 28 марта – 1 апреля 2022 г.) - 2022, pp. 149-151
5. 22Bezrodnyi V.V., Mikhtaniuk S.E., Shavykin O.V., Neelov I.M., Sheveleva N.N., Markelov D.A. Computer simulation and NMR study of the temperature dependencies of the structural and dynamic characteristics of Lys2Arg peptide dendrimers // Magnetic Resonance and its Applications. SPINUS-2021: Proceedings 18th International School-Conference - 2021, pp. 182-184
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6. 21Bezrodnyi V.V., Mikhtaniuk S.E., Shavykin O.V., Neelov I.M., Sheveleva N.N., Markelov D.A. Size and Structure of Empty and Filled Nanocontainer Based on Peptide Dendrimer with Histidine Spacers at Different pH // Molecules - 2021, Vol. 26, No. 21, pp. 6552 [IF: 2.861, SJR: 0.744]
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7. 20Bezrodnyi V.V., Shavykin O.V., Neelov I.M. Novel lysine-based peptide dendrimers modeled by the self-consistent field approach // Magnetic Resonance and its Applications. SPINUS-2021: Proceedings 18th International School-Conference - 2021, pp. 185-187
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8. 19Mikhtaniuk S.E., Bezrodnyi V.V., Shavykin O.V., Neelov I.M., Sheveleva N.N., Markelov D.A. The structural and dynamic characteristics of Lys2Gly and Lys2Lys peptide dendrimers. The molecular dynamics simulation at different temperatures // Magnetic Resonance and its Applications. SPINUS-2021: Proceedings 18th International School-Conference - 2021, pp. 231-233
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9. 18Sheveleva N.N., Bezrodnyi V.V., Mikhtaniuk S.E., Shavykin O.V., Neelov I.M., Tarasenko I.I., Vovk M.A., Mikhailova M.E., Penkova A.V., Markelov D.A. Local Orientational Mobility of Collapsed Dendrimers // Macromolecules - 2021, Vol. 54, No. 23, pp. 11083-11092 [IF: 5.835]
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10. 17 Gorzkiewicz M., Kopeс O., Janaszewska A., Konopka M., Pedziwiatr-Werbicka E., Tarasenko I.I., Bezrodnyi V.V., Neelov I.M., Klajnert-Maculewicz B. Poly(lysine) Dendrimers Form Complexes with siRNA and Provide Its Effcient Uptake by Myeloid Cells: Model Studies for Therapeutic Nucleic Acid Delivery // International Journal of Molecular Sciences - 2020, Vol. 21, No. 9, pp. 3138 [IF: 3.226, SJR: 1.179]
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11. 16Bezrodniy V.V., Fatullaev E.I., Mikhtaniuk S.E., Tarasenko I.I., Neelov I.M. Interaction of lysine dendrimer with 8 and 16 molecules of EDR peptide // International Journal of Biology and Biomedical Engineering - 2020, Vol. 14, pp. 1-6
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12. 15Bezrodniy V.V., Fatullaev E.I., Shavykin O.V., Neelov I.M. Molecular dynamics simulation of global and local dynamics in lysine-based dendrimers with double argenine and double histidine // Magnetic Resonance and its Applications. SPINUS-2020: Proceedings 17th International Youth School-Conference (Saint Petersburg, 29March-3April, 2020) [сборник трудов] - 2020, pp. 152-154
13. 14Bezrodnyi V.V., Mikhtaniuk S.E., Shavykin O.V., Neelov I.M. The orientational dynamics in the dipeptides: the role of type of the side chains // Magnetic Resonance and its Applications. SPINUS-2020: Proceedings 17th International Youth School-Conference (Saint Petersburg, 29March-3April, 2020) [сборник трудов] - 2020, pp. 155-157
14. 13Bezrodnyi V.V., Shavykin O.V., Mikhtaniuk S.E., Neelov I.M., Markelov D.A. Molecular Dynamics and Spin-Lattice NMR Relaxation in alpha- and epsilon-Polylysine // Applied Magnetic Resonance - 2020, Vol. 51, No. 12, pp. 1669-1679 [IF: 0.864, SJR: 0.272]
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15. 12Bezrodnyi V.V., Shavykin O.V., Mikhtaniuk S.E., Neelov I.M., Sheveleva N.N., Markelov D.A. Why the orientational mobility in arginine and lysine spacers of peptide dendrimers designed for gene delivery is different? // International Journal of Molecular Sciences - 2020, Vol. 21, No. 24, pp. 9749 [IF: 3.226, SJR: 1.179]
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16. 11Mikhtaniuk S.E., Bezrodniy V.V., Fatullaev E.I., Neelov I.M. Computer simulation of interaction of lysine dendrimer with molecules of Gly-Glu-Asp peptide // Magnetic Resonance and its Applications. SPINUS-2020: Proceedings 17th International Youth School-Conference (Saint Petersburg, 29March-3April, 2020) [сборник трудов] - 2020, pp. 217-220
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17. 10Mikhtaniuk S.E., Bezrodniy V.V., Shavykin O.V., Neelov I.M., Sheveleva N.N., Penkova A.V., Markelov D.A. Comparison of Structure and Local Dynamics of Two Peptide Dendrimers with the Same Backbone but with Different Side Groups in Their Spacers // Polymers - 2020, Vol. 12, No. 8, pp. 1657 [IF: 3.364, SJR: 0.8]
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18. 9Ilyash M.Y., Bezrodnyi V.V., Fatullaev E.I., Mikhtaniuk S.E., Tarasenko I.I., Neelov I.M. Computer simulation of complexation of lysine dendrigraft of second generation with DS dipeptide molecules // International Journal of Biology and Biomedical Engineering - 2019, Vol. 13, pp. 63-69
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19. 8Mikhtaniuk S.E., Bezrodnyi V.V., Fatullaev E.I., Marchenko A.A., Bychkova E.I., Neelov I.M. Investigation of complex of lysine dendrimer of 2nd generation with 8 molecules of therapeutic vezugen peptide by computer simulation // Magnetic Resonance and its Applications. SPINUS-2019: proceedings (16th International Youth School-Conference, Saint Petersburg, 31March-5April, 2019) [сборник тезисов] - 2019, pp. 213-215
20. 7Neelov I., Bezrodnyi V., Marchenko A., Fatullaev E., Miktaniuk S. Computer simulation of complex of lysine dendrigraft with molecules of therapeutic KED peptide // ITM Web of Conferences - 2019, Vol. 24, pp. 02008
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21. 6Neelov I., Khamidova D., Bezrodnyi V., Mikhtaniuk S. Molecular Dynamics Simulation of Interaction of Lysine Dendrigraft of 2nd Generation with Stack of Amyloid Peptides // International Journal of Biology and Biomedical Engineering - 2019, Vol. 13, pp. 26-31
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22. 5Shavykin O.V., Bezrodniy V.V., Mikhtaniuk S.E., Neelov I.M., Markelov D.A. Computer simulation of orientational dynamics in alpha- and epsilon-lysine peptides // Magnetic Resonance and its Applications. SPINUS-2019: proceedings (16th International Youth School-Conference, Saint Petersburg, 31March-5April, 2019) [сборник тезисов] - 2019, pp. 245-247
23. 4Khamidova D.N., Bezrodnyi V.V., Popova A., Mikhtaniuk S.E., Neelov I.M., Popova E.V. Molecular dynamics simulation of complexes of lysine dendrimer and dendrigraft with AENG tetrapeptide // International Journal of Biology and Biomedical Engineering - 2018, Vol. 12, pp. 45-58
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24. 3Neelov I.M., Shavykin O.V., Ilyash M.Y., Bezrodnyi V.V., Mikhtaniuk S.E., Darinskii A.A. Comparison of size and other properties of lysine dendrimers and short lysine dendritic brush // Journal of Bioenergetics and Biomembranes - 2018, Vol. 50, No. 6, pp. 565-565 [IF: 2.576, SJR: 0.668]
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25. 2Neelov I.M., Shavykin O.V., Ilyash M.Y., Bezrodnyi V.V., Mikhtaniuk S.E., Marchenko A.A., Fatullaev E.I., Darinskii A.A., Leermakers F.A. Application of High Performance Computing for Comparison of Two Highly Branched Lysine Molecules of Different Topology // Supercomputing Frontiers and Innovations - 2018, Vol. 5, No. 3, pp. 60-64 [SJR: 0.212]
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26. 1Popova E., Bezrodnyi V.V., Neelov I.M. Effect of dendrimer generation on the kinetics of peptide complex formation // Magnetic Resonance and its Applications. SPINUS-2018: abstracts book (15th International Youth School-Conference, Saint Petersburg, November 1-6 April, 2018) - 2018, pp. 232-235